rs48526563 SNP Detail

Summary

• ID
  rs48526563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89720987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTTGTG ACTCCCCGAG ACAGGCAGCA CTTGTGTCTG
  TCCTTAGTCT CTTCCCCCCG TTGTCTCTCT TTGAAGTAAC ACGCTTCCAT ATTTACACTA
  Y
  GGAAATGCTG TGACCCTCAA ACCAGGCCCA CAAACGACCG CTTAAAAAGC GAACCAGTGG
  AGCTGCAGAG ATGGCTCAAT ATTTCAGAAT ACTTACTGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61031860	NES16094503	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48526563					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031860	NES16094503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89720987 () rs orientation: forward

Symbol	Name	Function Class
Tssr2327	transcription start site region 2327	87 bp downstream