rs48527523 SNP Detail

Summary

• ID
  rs48527523
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172033616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTCTTAA AGGTGTGTTT
  S
  TGTCCCTGTC GGTTTTGACA AGGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007340	PARCsnp_1.17748	PARC_SEQ	INBRED	f	SNP			C	G
ss120010239	PARCsnp_1.07387	PARC_SEQ	INBRED	f	SNP			C	G
ss146183813	ENSMUSSNP6549189	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320123196	CHEV_1_174136180	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48527523					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172033616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	159 bp proximal
Gm17224	predicted gene 17224	978 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr396578	regulatory region 396578	1191 bp upstream
Rr423483	regulatory region 423483	1106 bp distal
Rr423484	regulatory region 423484	573 bp distal
Rr423485	regulatory region 423485	within coordinates
Rr423486	regulatory region 423486	745 bp proximal
Tssr294	transcription start site region 294	579 bp downstream
Tssr295	transcription start site region 295	631 bp downstream
Tssr296	transcription start site region 296	707 bp downstream
Tssr297	transcription start site region 297	738 bp downstream
Tssr15164	transcription start site region 15164	605 bp downstream
Tssr15165	transcription start site region 15165	635 bp downstream
Tssr15166	transcription start site region 15166	726 bp downstream
Tssr15167	transcription start site region 15167	1652 bp downstream