rs48529086 SNP Detail

Summary

• ID
  rs48529086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115050194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC TCCCTTGTCT AATCAGACTC
  R
  ATTGTTTTTA ATGATTTAGG CCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149118851	ENSMUSSNP4315820	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321653768	CHEV_5_115362142	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48529086					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115050194 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	1639 bp distal
Tssr48139	transcription start site region 48139	1111 bp downstream
Tssr48140	transcription start site region 48140	1077 bp downstream
Tssr48141	transcription start site region 48141	860 bp downstream
Tssr48142	transcription start site region 48142	770 bp downstream
Tssr48143	transcription start site region 48143	727 bp downstream
Tssr48144	transcription start site region 48144	687 bp downstream
Tssr48145	transcription start site region 48145	620 bp downstream
Tssr48146	transcription start site region 48146	554 bp downstream
Tssr48147	transcription start site region 48147	539 bp downstream
Tssr48148	transcription start site region 48148	473 bp downstream
Tssr48149	transcription start site region 48149	453 bp downstream
Tssr48150	transcription start site region 48150	440 bp downstream
Tssr48151	transcription start site region 48151	398 bp downstream
Tssr48152	transcription start site region 48152	340 bp downstream
Tssr48153	transcription start site region 48153	250 bp downstream
Tssr48154	transcription start site region 48154	234 bp downstream
Tssr52739	transcription start site region 52739	1130 bp upstream