rs48529308 SNP Detail

Summary

• ID
  rs48529308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACACACAG CTGGAGGTGG TATGAATGGC
  CTCTGCAGCA GTCACACTAG TATCCACAGG CACAGTGCTC TGTGATCATC CACTAGAACC
  CTGCTGCTTG TCTCAGGCGA GCCTCAGGGC AACACCTCGC CCTCACTCAG ACATCAGCTC
  Y
  ATCCCTTCCT GTACTTGGAT ACTGTCCTTG GCAATGCCAG CTTCAGCAAG AAGCTGAGGG
  AGATAGAGGC CATGATCGCA GTCCAAGAGG AAAAGATCTT CAGACTCAGA AGAATCATAA
  AATGATGAGG AGTCTCTAAG CCAAGATGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148937651	ENSMUSSNP695670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss319691073	CHEV_1_37316368	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48529308					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298604 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	1755 bp proximal
Gm69908	predicted gene, 69908	834 bp downstream
Rr409496	regulatory region 409496	869 bp distal