rs48529534 SNP Detail

Summary

• ID
  rs48529534
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAACTTA AAGCTGTCTG
  TGCTGTTGGG ACCCTCACCC GTGCGCACCG TCATCCCTGC CTATGTCTGA GCGGTCAGAG
  AAGAGAACTG CTCAGCTTCG CAGGGTCCTT CCTCCGATGC AGCAACATCA GAAGCCCAGG
  CACGAATTCA AGACTGAACA CGATTATTTT AAGGCCAGGC TTACGGTTCC TTTTGTCAAT
  T
  ATTTTTAAGA ATACATTTGA GATGTATCAT CTTCCGGCCA CACCTCATTT ATAAAACAAA
  ACAAAAACTA CCACTTACGT TCATATAGAG CTGGGGTGTG GCTCAGTGGT AAAGCACTTG
  CCCAGCCTGC ACAAGGCCCT GGGTTGGATT CCCAGTTCTA CAAGAAAAGA CTCCCCACAC
  CTAAAGCTTT CACATATTCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146155858	ENSMUSSNP5212274	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48529534					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234586 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1146 bp proximal
Rr532332	regulatory region 532332	1378 bp proximal
Tssr149724	transcription start site region 149724	1405 bp downstream