rs48530980 SNP Detail

Summary

• ID
  rs48530980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28946150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGACCCCA CATTAAAAAA
  AAAAAGAGCC CAAAGTAGAT CTATTCTTAT AATCTCAGAG CTAGGAATGT GGGGCTCATT
  GGTACCAGCC TAGCCTACTT GGTAAAGGGT CCTCTAACTC CCACAAATAT AGGTACACAC
  ACACACACAC ACCCCCAAAG AAACATCGGG AACAGTGAGG TGGCTAAGCA GGTGAAGGGC
  R
  CTCGCTACCA AGCTCCTGCA GGCTGCGCTG ACGTGCATAC CAGGGCTCAA GTAGATCCAT
  CACCAGGAAC TCGAGGCCAC CTTGGTCTAC ATGTCAAGAT CCTGCCTCCC AGAGAGAAAG
  AGCGCGGGAG GGGGAGAAGG AGGGGGAGGA AGGCATCTGA GCCAAACCAA AAAGGAAATA
  GCTCTTCTAG TTTGTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986969	NES16139377	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48530980					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986969	NES16139377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28946150 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	796 bp downstream
Cpgi18753	CpG island 18753	510 bp proximal
Gm73451	predicted gene, 73451	890 bp upstream
Rr644522	regulatory region 644522	1409 bp distal
Rr644523	regulatory region 644523	400 bp proximal
Rr644524	regulatory region 644524	819 bp proximal
Rr644525	regulatory region 644525	1731 bp proximal
Tssr65617	transcription start site region 65617	975 bp downstream
Tssr65618	transcription start site region 65618	910 bp upstream
Tssr71635	transcription start site region 71635	397 bp downstream
Tssr71636	transcription start site region 71636	1001 bp downstream
Tssr71637	transcription start site region 71637	1201 bp downstream
Tssr71638	transcription start site region 71638	1219 bp downstream
Tssr71639	transcription start site region 71639	1650 bp downstream
Tssr71640	transcription start site region 71640	1732 bp downstream
Tssr71641	transcription start site region 71641	1786 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates