rs48532789 SNP Detail

Summary

• ID
  rs48532789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95921258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGAAAATCA ATTTTCTCAG CAACACTTGT TTGAGATCCT
  GGCTATTCTT CAGTGTGCAT TCTCCTACTC TTTGTCAAAA ATTAGATGAC TGTGATCATT
  Y
  GGACTTACAT CTGGGTACTC AGTTATATTC CATTGATCTG TCTATATATT TTTGGATGAT
  TACCACATTC TTCTTCCATG GCTCTGCATA TGATTTGAAA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134250612	ENSMUSSNP2902892	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48532789					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95921258 () rs orientation: forward

Symbol	Name	Function Class
Rr5036	regulatory region 5036	1058 bp distal
Rr5037	regulatory region 5037	1143 bp proximal
Rr8052	regulatory region 8052	1092 bp proximal