rs48532978 SNP Detail

Summary

• ID
  rs48532978
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84466473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT TGACCCTCCT GCCTCTACTC
  G
  CTAGGTACTC TGATAGCAGA CACAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145361125	ENSMUSSNP1047586	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48532978					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84466473 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	1034 bp proximal
Gm46046	predicted gene, 46046	1442 bp upstream
Rr368559	regulatory region 368559	93 bp upstream
Rr666301	regulatory region 666301	1315 bp proximal
Rr666302	regulatory region 666302	1472 bp proximal
Rr666303	regulatory region 666303	1526 bp proximal
Tssr2618	transcription start site region 2618	262 bp downstream
Tssr2619	transcription start site region 2619	546 bp upstream
Tssr2620	transcription start site region 2620	1432 bp upstream
Tssr78289	transcription start site region 78289	1423 bp downstream
Tssr78290	transcription start site region 78290	1395 bp downstream
Tssr78291	transcription start site region 78291	493 bp upstream
Tssr78292	transcription start site region 78292	519 bp upstream
Tssr78293	transcription start site region 78293	637 bp upstream
Tssr78294	transcription start site region 78294	720 bp upstream
Tssr78295	transcription start site region 78295	771 bp upstream
Tssr78296	transcription start site region 78296	791 bp upstream
Tssr78297	transcription start site region 78297	1544 bp upstream
Tssr82049	transcription start site region 82049	217 bp downstream
Tssr82050	transcription start site region 82050	302 bp downstream
Tssr82051	transcription start site region 82051	583 bp downstream
Tssr82052	transcription start site region 82052	1329 bp downstream