rs48533339 SNP Detail

Summary

• ID
  rs48533339
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55151574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACACCC TCTCCATTAA
  TCTGGGTATC TTCGAATGCT TCCCTCTTTG AAACAACGGT GCCTTCACCA TCCACCGATG
  GTGAGGTCCG ATGTTCGGTG TGTGCCCTTG GAATGCCTTC ATCTCATGTC AAGACCCTTA
  TAAAACTCTT CCTACTCTGC TACTCCACAG TCCTCTCACT CAGGGTGGAC TGACTGGTGT
  T
  CAGAGGCCAC TCTGCTTCTC TCCATGTTAC TTGTGATGCA GATGGATCCA TCTTTTTTTT
  TTATAATGCA GATGTTTCAT TTTTTTAAAA ATGTATTACT GTGCAAGTAC ATGATGCGTG
  TGTGTAGGTA TGCAGGCCAT GCTGTGTTTG TTGGAGGTCA GAGGCTAACT TGACAGTTCC
  TGTCTTCCAT CTTTTCAAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139573049	ENSMUSSNP6326058	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324640835	CHEV_14_55532954	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48533339					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55151574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	811 bp distal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	985 bp upstream
Tssr128658	transcription start site region 128658	1786 bp upstream
Tssr128659	transcription start site region 128659	1659 bp upstream
Tssr128660	transcription start site region 128660	1075 bp upstream
Tssr128661	transcription start site region 128661	1033 bp upstream
Tssr128662	transcription start site region 128662	989 bp upstream