rs48535048 SNP Detail

Summary

• ID
  rs48535048
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67055118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGATACATA GCTCAAATAT AAACAGTGTA CTTTATTAAA
  GCTCAATAGT GGTCTTACCA TGCTGTCTTT CAGACTTAAG CTGAGACCCA GGACAGCATA
  G
  AACTGTCTCA TTATGAATCC AAAATGTTAT GTAATGATTT TAGTCAGAAG TTCTAGTTCC
  GTTGCCTTCT TCCCTTTTCT TCTGTTTCTG ATGCAGCTCT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149258987	ENSMUSSNP6146445	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48535048					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67055118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5796	CpG island 5796	1681 bp distal
Mterf3	mitochondrial transcription termination factor 3	within coordinates
Ramacl	RNA guanine-7 methyltransferase activating subunit like	within coordinates
Rr273407	regulatory region 273407	483 bp proximal
Rr281575	regulatory region 281575	917 bp distal
Rr369737	regulatory region 369737	1622 bp downstream
Tssr123084	transcription start site region 123084	1684 bp upstream
Uqcrb	ubiquinol-cytochrome c reductase binding protein	1676 bp upstream