rs48535338 SNP Detail

Summary

• ID
  rs48535338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3842452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGACCAG AAAGCCTTAT
  TTTCCAGAAA GCCTTATTTT TTTTTTTCTT GGCCATTTAT TCACTGTCTA AAATAGGCTG
  GCCTCTAACT TGCAGCGTTC ATCATGTCGG TGGGAGTGAT GGAGCATTTA AAATGGCTCC
  TGAAGCCAGG TGTGGGGACA CATGCATGCA GTCCCAACAT TTGCTTCTCA TGATGGACGA
  S
  GCTTGGAGTC GAGAGGGGTG GTAGCCTTTT CCCTGGTGGG ACGGCCAAGA CATCGCCAGC
  TCCTCCCCTA GAGAGACTGA CTGGAGACCC TCGAACTACA TCAAGCACAG AACTGACACA
  GCCAGGGTTC ACTCTGCCCC CGATTCTTTT TTTTTTTTTT TAAGATTTAT TTATTTATTT
  AATGTAAGTA CACTTTAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61337747	NES16944865	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	G	G	G	G	G	G		C	G	G	C		G
ss137098005	ENSMUSSNP3760465	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
ss323872814	CHEV_12_3792452	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48535338					SNP	C	C	G	C	G	G	G	G	G	G	G	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337747	NES16944865	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3842452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	257 bp distal
Gm60243	predicted gene, 60243	146 bp downstream
Rr403217	regulatory region 403217	332 bp downstream