rs48535376 SNP Detail

Summary

• ID
  rs48535376
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34421975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGGACA GGAGTGCTCA
  GGGCAGGATT ACTCAGCACA GGAGTGCTCA GTGCAGGAAT ACTTGGTGCA GGAGTGCTCA
  GCTCAGGAGT GTTCAGGACA GGAGTGCTCA GGATAGGAGT GCTCAGGTCA GGAATGCTCA
  GCGCAGGAGT ACTCAGCACA TGCATGCTCA GGGCAGGAGT ACTCAACACA GGCATGCTCA
  A
  GACAGGAGTG CTCAGGGCAG GAGTACTCAG GACAAGAGTG CTCAGAGCAG GAGTACTCAG
  GACAGGAGTG CTCAGGGCAG GAGTGTTCAG GGCACAGCAC AGGAGTACTC AGCACAGTGC
  TCAGTGCAGG CATGCTCAGT GCAGGAGTAC TCAGGACAAG AGTACTCAGT ACAGAGTGTT
  TGGTGTAGGA GTGCTGAGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145509361	ENSMUSSNP2059323	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48535376					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34421975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9035	CpG island 9035	1385 bp proximal
Gm20496	predicted gene 20496	within coordinates
Psmb8	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	1547 bp downstream
Rr526093	regulatory region 526093	36 bp proximal
Rr526094	regulatory region 526094	537 bp proximal
Rr526095	regulatory region 526095	941 bp proximal
Rr526096	regulatory region 526096	1447 bp proximal
Tap2	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	1478 bp upstream
Tssr143937	transcription start site region 143937	1091 bp upstream
Tssr143938	transcription start site region 143938	1476 bp upstream
Tssr143939	transcription start site region 143939	1506 bp upstream
Tssr143940	transcription start site region 143940	1583 bp upstream
Tssr143941	transcription start site region 143941	1830 bp upstream
Tssr147541	transcription start site region 147541	1548 bp upstream