rs48535509 SNP Detail

Summary

• ID
  rs48535509
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA CAGACACACG AAGGACAGGG
  M
  GACTCCAGAT CAACAGCCCT CTAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132221379	ENSMUSSNP3604452	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323695608	CHEV_11_58816667	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48535509					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893991 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	245 bp distal
Tssr101782	transcription start site region 101782	215 bp downstream
Tssr101783	transcription start site region 101783	196 bp downstream
Tssr101784	transcription start site region 101784	184 bp downstream
Tssr108189	transcription start site region 108189	972 bp upstream
Tssr108190	transcription start site region 108190	934 bp upstream
Tssr108191	transcription start site region 108191	799 bp upstream
Tssr108192	transcription start site region 108192	780 bp upstream
Tssr108193	transcription start site region 108193	764 bp upstream
Tssr108194	transcription start site region 108194	716 bp upstream