rs48535861 SNP Detail

Summary

• ID
  rs48535861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32113843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATTTCC ACTGGACTTC
  TTGGAGACAG GAGCATAATT TGCTCATCTT GGTAACTCTG TGGGCAGTGG TGGATAATGA
  TGATGCCCAT GACAGCAGCC AACATCTTTA AGCTCTAATA CCATGTGCGT AGTATTGGGT
  TAGCTGCTGA AAGAACAACC TTCTCAATTT AATTCTCATG ACAATGCCAC CAACTGGTCA
  Y
  CTCTTCTTAT GCCTAAACAC ACTGAGCCAC TAAATAGTTA TAAAACTTGC TTAAAGATAT
  ATGAATAGTC TGACTACAGA GGTCACACTC ACTGTCATTG AATGGACCTT ATAAACAACG
  GTAATGCCAG CAATAGCATC ACAGTTCACC AAGAGCTCTC TCTTCCAGCA GCTGTGGTGG
  TTTCATCCCC TACTCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss60383491	NES15883101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs48535861					SNP	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60383491	NES15883101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32113843 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	within coordinates
Rr80380	regulatory region 80380	within coordinates