rs48536800 SNP Detail

Summary

• ID
  rs48536800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124145404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCGGGGCC TGCCGAGGCC
  TAATGGGTTA GTCAGACAAA GCCAGCCTGA CCTGGCAATG TGTAGCCAGC CCTGACTTGC
  TAAGGCATAC ATACAGGTGA CCCTGACTCA TTTCCTCCCC TCACAAGGCT CCAGCCCTGG
  ATTCAGCCAG CCACGTGTAG CAGCAGCGAT TAGCTGCCTC GTTGACCACA GCAGACGCCG
  Y
  AGACACTAGC ACCCAAGAGG CTGGCATTAG TTCAGGGCAG CATGAGCATC CACACCCAGG
  CCCCAGCTGA ACCGCTTGAT CCCGGCCTAG CACGTTCCCT AGCCAGAGGC CAAGATGGCC
  ACGTGCATCC AGGCCTCTGT GTGTTGGAAG TGCCGCTGGC TGGCTGTGGA GCTGTGGGGC
  TCCCATGTCC TGGAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835793	NES16016902	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48536800					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835793	NES16016902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124145404 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	1190 bp downstream
Rr620321	regulatory region 620321	1913 bp distal
Rr620322	regulatory region 620322	1252 bp distal
Tssr48833	transcription start site region 48833	851 bp downstream
Tssr53284	transcription start site region 53284	1693 bp upstream
Tssr53285	transcription start site region 53285	1187 bp upstream
Tssr53286	transcription start site region 53286	847 bp upstream
Tssr53287	transcription start site region 53287	772 bp upstream
Vps37b	vacuolar protein sorting 37B	within coordinates