rs48537163 SNP Detail

Summary

• ID
  rs48537163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGACCC TCTTTCGTGC
  TGCCTAGAAG CTAGTCTTTT CCTGTTTGCC TTTGGTTTTT TTTGGGTTTT TTTGTTTTGT
  TTTGTTTTTG TTTCTGTTTT TTTTCGAGAC AGGGTTTCTC TTTATAGCCC TGGCTGTCCT
  GGAACTCACT TTGTAGACCA GGCTAGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC
  Y
  GAGTGCTGGG ATTAAAGGTG TGGCGCACCA CGCCCAGCTC CTGTTTGCCT TTGGATGAAG
  ATGTAAAACT CTCAGCTCCT GCTGCATCTA GCCTGCCTGG ACACTGCCAT GCTCCCACCT
  TGATAGGAGA CTGAACTTCT GAACCTGTAG GGGTAGAGAA TGTGACCCAC AGAAACACAG
  CTTAATGACA GATTGCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148207634	ENSMUSSNP790548	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48537163					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1493 bp upstream
Rr569443	regulatory region 569443			362 bp distal
Rr569444	regulatory region 569444			516 bp distal
Rr569445	regulatory region 569445			405 bp proximal
Serinc3	serine incorporator 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1822 bp upstream