rs48537423 SNP Detail

Summary

• ID
  rs48537423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114954732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAGATA CCGTCTCCAC
  GCTGCGAATA AGAACCCGGA TCCCACACTG GATGGAGGGG CCGCATAGGT TAGCCTGGGG
  AAGGCCACCC TGCCGGGTCA CACAAGAGGT CGCAGCACTG GGATCCAAAA GCAGAGTAAA
  CTTTTGTGGG TGCAGGAGGC GTGGCGGGGC GGAGCGAAGT GTACGCAGGC GCAGTGTCCA
  Y
  ACGCCCGGGG TTGAGCACCA CCCAGAAGGT GGAGCATCCG GCTGCGCATG CGCTCTGAGT
  CACCGGCGCC TCTAGGGGTT GGAGAACTGG CTTCGCGGTG TGTAGCGGGA TGGTTCCTAG
  GTGCCAGGTA AGAGTTGGTT CGCGCGGCTG GGGCGCCCCT TCCTCTCTAA CTCCTCCCGG
  GTTCCGGGTC TTGCGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62050110	NES17145362	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48537423					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62050110	NES17145362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114954732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	within coordinates
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	within coordinates
Rr280966	regulatory region 280966	within coordinates
Rr404003	regulatory region 404003	within coordinates
Tssr121205	transcription start site region 121205	36 bp upstream