rs48538460 SNP Detail

Summary

• ID
  rs48538460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TAAAGGCTGT TGTGAACTGC
  Y
  ACATCGGTGC TGGGAATCGA CCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146433189	ENSMUSSNP6300844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325817168	CHEV_19_44145026	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48538460					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	362 bp distal
Erlin1	ER lipid raft associated 1	751 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	666 bp distal
Rr548151	regulatory region 548151	275 bp distal
Rr548152	regulatory region 548152	38 bp distal
Tssr159429	transcription start site region 159429	1114 bp upstream
Tssr159430	transcription start site region 159430	861 bp upstream
Tssr159431	transcription start site region 159431	828 bp upstream
Tssr159432	transcription start site region 159432	749 bp upstream