rs48539268 SNP Detail

Summary

• ID
  rs48539268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51134687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCATTGTA TATCATAATA ATTGGACAAC TTTTATTGAT
  TTTCCTCTTG AATGGTTTCA TAAATGTGTG CAATACATTC AGTTTTCCCC GTTAACACAC
  R
  AGATTCAGGG AGATTGACTG ATTCGTCTGT CCAGATCTAC TGAAGTTGAA GCGGCTTTCC
  TCTATGGGCT ATGCTATGAT CGATTCATAA TTCTCACAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60462118	NES16447877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48539268					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60462118	NES16447877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51134687 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	981 bp proximal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	1269 bp upstream