rs48539279 SNP Detail

Summary

• ID
  rs48539279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:44839960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTCTT ACTCATGCTA
  GCACAGGCCA GTGAACGTGA ATGATTACAG ACATTAGAGT TGAGTCAGCA TGCGCCTGGC
  ATGCACCAGA TATAAATGTT AGAGATGAAC AGTTATAGAT AATTAAAGAA ACTCATGCTT
  CCTAACATAC GAAACTAAAG TATAGTGAGC CCAGAATACT TGCAAGTGCG CGCACGCACA
  Y
  GCACACACAC ACACACACAC ACAGTCTCAA TATATAGCTT GGGCTGGCTT TGAATTTGTA
  ATCCTCCCGC TTTAGCAGGA AGGCAGGTAT GAGCCATCAT ACCTCACCCT CATGCCCACT
  GTAATAACTA GACTTTGGTT CCTCCTTTTC TTTATTTCTT TTGCTTTCTT GTCTAACTCA
  GTCATTTTAT TAAAGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131063	ENSMUSSNP6256011	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48539279					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44839960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm31097	predicted gene, 31097			within coordinates
Kash5	KASH domain containing 5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646366	regulatory region 646366			1165 bp proximal
Tssr72334	transcription start site region 72334			1823 bp upstream
Tssr72335	transcription start site region 72335			970 bp upstream
Tssr72336	transcription start site region 72336			886 bp upstream
Tssr72337	transcription start site region 72337			823 bp upstream
Tssr72338	transcription start site region 72338			727 bp upstream