rs48539526 SNP Detail

Summary

• ID
  rs48539526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34862329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGCATT TCCCTTTCTC
  AACACCATAA AGAAAAACAA CAACAAAAGT GCATCAAGTT GTCAATTTGG GACTGCATAT
  ACTTGCTGAG CTCCTGAGGT TAACCGGGGT CCTTCTGGCC CACTTTGCAT AGAAACTCCC
  AGGAGAGGCT TCCAACCCTG CTGGCAATGG GAAAGCTGCA CCCTCACCAG TCTGTGATAG
  Y
  TTTACTCAGG GTTACTGTTG CTGTGCTGAA GCACCATGAC CAAAGCAGCT TGGGGAGGAA
  GGGGTTTATT TGGCCCATAC TTCCACACCA CTGTTCATCA CCAAAGGAAG GCAAGACAAG
  AATGCAAAAA GGGAAGGGAC CTGGAGGCAG GAGCTGATGC AGAAGCCATG GAGGGGTGCT
  GCTTACTGGC TTACTCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993875	NES16131315	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48539526					SNP	T	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993875	NES16131315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34862329 () rs orientation: forward

Symbol	Name	Function Class
Gm38988	predicted gene, 38988	433 bp downstream
Gm73982	predicted gene, 73982	136 bp downstream