rs48539929 SNP Detail

Summary

• ID
  rs48539929
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT ACATGCATCT CTCCGTGGTG
  M
  TTCCAGCAGG GGTTGAAGTG GGGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137438961	ENSMUSSNP2162713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48539929					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492099 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	987 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	646 bp downstream
Tssr112998	transcription start site region 112998	1641 bp upstream
Tssr112999	transcription start site region 112999	1688 bp upstream
Tssr113000	transcription start site region 113000	1812 bp upstream
Tssr115902	transcription start site region 115902	757 bp downstream
Tssr115903	transcription start site region 115903	1089 bp downstream
Tssr115904	transcription start site region 115904	1106 bp downstream
Tssr115905	transcription start site region 115905	1411 bp downstream
Tssr115906	transcription start site region 115906	1539 bp downstream
Tssr115907	transcription start site region 115907	1594 bp downstream
Tssr115908	transcription start site region 115908	1634 bp downstream
Tssr115909	transcription start site region 115909	1720 bp downstream
Tssr115910	transcription start site region 115910	1772 bp downstream
Tssr115911	transcription start site region 115911	1822 bp downstream
Tssr115912	transcription start site region 115912	1836 bp downstream
Tssr115913	transcription start site region 115913	1871 bp downstream
Tssr115914	transcription start site region 115914	1923 bp downstream
Tssr115915	transcription start site region 115915	1952 bp downstream