rs48540047 SNP Detail

Summary

• ID
  rs48540047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72888141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGTCCCA CCCGCAGTAA
  CTTCCCTTGG CCAGCCGGGC TCCACAGCCT TCCTCAACAG CGCCAGCACC CAGGGAACAA
  GAGTTCAAGC ACACAAGTCT GTGGGGGGAG CTTTTTACAT GCAACCCACG TTACCACCTA
  CAGAGTTAGG AAACACCCAG CTAAGTTGTG GAGGCTGGGC TCCTGGCACC TGGTGGTCAC
  R
  CGTTAGCTAA TAGTCTTCTC CTTAATTACA ACAGCCACCC TCCTCAGGGA GGTTAGGGCT
  CTAGGAAGCT GAATCTGGAC TGTCTTCCTC TCTTTCTCTG CAGACAGTGA TGACGACCAC
  TCTGAGGGAG GCCTGGTGGA GAACCACGTG GATGGGACCA TGAACATGTT GGGAGGTGGT
  AGCAGTGCTG GCCGGAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60750565	NES16381645	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48540047					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750565	NES16381645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72888141 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	97 bp upstream
Tssr7322	transcription start site region 7322	126 bp upstream
Tssr7323	transcription start site region 7323	169 bp upstream
Tssr7324	transcription start site region 7324	218 bp upstream
Tssr7325	transcription start site region 7325	233 bp upstream
Tssr7326	transcription start site region 7326	263 bp upstream
Tssr7327	transcription start site region 7327	292 bp upstream
Tssr7328	transcription start site region 7328	595 bp upstream
Tssr7329	transcription start site region 7329	630 bp upstream
Tssr7330	transcription start site region 7330	644 bp upstream
Tssr12178	transcription start site region 12178	133 bp downstream
Tssr12179	transcription start site region 12179	176 bp downstream
Tssr12180	transcription start site region 12180	240 bp downstream
Tssr12181	transcription start site region 12181	261 bp downstream
Tssr12182	transcription start site region 12182	304 bp downstream
Tssr12183	transcription start site region 12183	325 bp downstream