rs48541196 SNP Detail

Summary

• ID
  rs48541196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:98619355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTTGTTG CTTGTAGTAT TTATAATAAT
  ACCTATGGCT AGAGCATACC TCCTATAGTT GCCTCACCTG GTCAGATGCT GACAATACTC
  TTCTCAGTAT GTGGGAGATG ATTTGGGTTC TCCTACATTG GTATATTTAA TTCTTAGAGA
  Y
  AGAATTTTCT CCATGCTTGA TGTTTACAAT AAGCTTGAAG ATAAATTTTA ATTTCAGGCC
  CAATTACTGT TTTCCTACTA AATGTTACTA GAGAATGCTA TTTTTCAGTT CTTATGGGAC
  CACCCAATTA ACACAGCTCT ATTGCTTGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60772840	NES16420683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss319867610	CHEV_1_100588207	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48541196					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60772840	NES16420683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:98619355 () rs orientation: forward

Symbol	Name	Function Class
Tssr8238	transcription start site region 8238	1846 bp upstream