rs48541208 SNP Detail

Summary

• ID
  rs48541208
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118663130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAGACTA TCTTGAACAT CATGGCTGCT GAGAAACGTA
  AAAGCTGGGA AGGTGGTGGA GTCGAGTCAG AGGCTCCCGG CTTTGCAGCT TCAATGTGCT
  S
  CTTGCTCTAA GACTTCCTGT GGCTGGAAGG GGTGATGTGC ATCTCCCTGG GGCGGAGGGA
  GTTCTGCTGA GGCAGCCCCC TGCCACCCGA AAATCAGATA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss61228700	NES16859602	PERLEGEN	MM_PANEL2	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs48541208					SNP	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61228700	NES16859602	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118663130 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr207790	regulatory region 207790	1331 bp distal
Tssr87654	transcription start site region 87654	1430 bp upstream
Tssr87655	transcription start site region 87655	1459 bp upstream