rs48541239 SNP Detail

Summary

• ID
  rs48541239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48116024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTGAA ATTTCCGTAC
  ACAGGGAGTT ATGCTCATCC AAGAAGCCAG AGATTGCCAA AGAAGATACT TCTATGCCAG
  GTCTGGGATA TTTCCCTTTG ATTTGCTAGT CCGGGGTGTC CTGGAGCCAC AAACATTTCT
  TATTTTCTCT TAGTTTCAAG TACTACTGTT GGCAAGTTAA CTACCATGAT GTTAGCTTGC
  R
  CTGTATATAT CAGCTACTCC TTGTAGACTA GGGTTTTAAG ATCTTCTCTT TGGTGTTAAA
  ATTCTTTGAC ACTTCCTGTG ACTATCATCC ATTGTGCCGA ATAATGTAGA AACTTAGGAT
  GGAAGTCCAC ATCTTCCTTT ATGGGAAAAT ATCTTATATT TTGTCCTTCC ATCATTTTCT
  GTTTCTAAAC ATTGTGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884396	NES16037452	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48541239					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884396	NES16037452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48116024 () rs orientation: forward

Symbol	Name	Function Class
Gm16630	predicted gene, 16630	within coordinates
Gm30435	predicted gene, 30435	within coordinates
n-TCgca4	nuclear encoded tRNA cysteine 4 (anticodon GCA)	1392 bp downstream
n-TCgca10	nuclear encoded tRNA cysteine 10 (anticodon GCA)	420 bp downstream