rs48541575 SNP Detail

Summary

• ID
  rs48541575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56901413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGAGCT TTACAGCCTT
  TGCATGGCTT TAGTTACAAG CTGGTCCTGG CAAACATGGA ATGTCTTGTG TTAGTGAGTA
  CTGCAAAGAG TGCACAGTAA GAACTGAGAT TCCAAGCGTG AGGAATTCCT TCAAGGAACT
  CAGAGATCGG ATCTTGGTTT TGGTATGAGG AACTTGTTTT ACTCTAAAAA TAACTTTTGA
  Y
  AATCAATAAA TACCCTTCTG CATGGCTGTT GGAGGTTCAG TCCGTCAGAG GCTGGACCTC
  TCGGATGCCT GCAAGGCTGT GGTTCATCCT GCAGTCACCC TTTTTCTTTG ATCATCCTTG
  TGACCGAGAT ACCAACACAA GGGGCAGAGC CATCAGCGCA GAGGTGCTGC AGAAATGAGG
  CTTGGGCTCC TCCCTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52725534	NES15565090	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	T	T
ss139588924	ENSMUSSNP2258423	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48541575					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52725534	NES15565090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56901413 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps18	basic transcription factor 3, pseudogene 18	1765 bp downstream
Gm62612	predicted gene, 62612	1494 bp downstream