rs48541711 SNP Detail

Summary

• ID
  rs48541711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129566167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGA GCCCGGCCCC CGGATCCACG
  R
  CAGGCGCAGG GCGAGAGGGC AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147445893	ENSMUSSNP4364549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321314549	CHEV_4_129349618	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48541711					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129566167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	within coordinates
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr100093	regulatory region 100093	within coordinates
Rr398522	regulatory region 398522	591 bp downstream
Tssr43552	transcription start site region 43552	323 bp downstream
Tssr43553	transcription start site region 43553	338 bp downstream
Tssr43554	transcription start site region 43554	408 bp downstream