rs48541817 SNP Detail

Summary

• ID
  rs48541817
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33578100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CAGGGACACT GTGGAGCACA
  G
  AGGTTCCAAG ATGGGCTACC ACCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146407849	ENSMUSSNP6035258	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320223163	CHEV_2_33543608	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48541817					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33578100 () rs orientation: forward

Symbol	Name	Function Class
Rr367177	regulatory region 367177	745 bp upstream
Rr555308	regulatory region 555308	452 bp distal
Rr555309	regulatory region 555309	1113 bp proximal
Rr555310	regulatory region 555310	1550 bp proximal
Rr555311	regulatory region 555311	1774 bp proximal