rs48543316 SNP Detail

Summary

• ID
  rs48543316
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43426360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTACCCCC TCTTATGCTT GTACTTCATC TTTTGCCCCC
  TTCAGGGCAC GTAGGGGGAG AGACGAGGAT CATCAAGGGT TATGAGTGCA GGCCTCACTC
  M
  CAGCCATGGC AGGTGGCCCT CTTTCAGAAG ACACGGCTTC TCTGTGGGGC AACCCTCATC
  GCCCCCAAAT GGCTCCTGAC AGCAGCCCAC TGCCGCAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61001516	NES16126568	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	A	A	C	A	C	C	A
ss149083650	ENSMUSSNP3755264	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48543316					SNP	A	C	A	A	A	A	A	C	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001516	NES16126568	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43426360 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66045	transcription start site region 66045	638 bp downstream