rs48543392 SNP Detail

Summary

• ID
  rs48543392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66416744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAAGAGT GGGTTTGGAT
  TGGAAAAGAA AAGTCCATGC CTGATTGTCA CAGGATAGCC TACTGGCAGG AACACCATTT
  TGCAATCAGA GAGGAGAGCT GAGAGAAGCC TGTTTGCTTC CTTGGGGATG ACAGGAAGAA
  CAGCCCTGGG ATGTGTTCCC ATTGGTTAAC CCAGGACAGA ATGCCTTCAA TGTCACCATC
  R
  AAACTGCTGT AATGGTACCC AAAGTAACAA CAGCCGTACC CAGTTTTGAC ACCCGTATAA
  ACTAGTCTCC ATGACTTTCT GGCTAGGGAA CAACAGCCTG GGAACACACA TCTCCCAGAA
  AAACGCCAAA ACGTCTTGGC GTGTGCACGT GCACGTGTGT TACCAGACTA TTAATTTAAA
  AACCTAAATA TAGCTCGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398792978	MGP_WTSI_17_66459089	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48543392					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398792978	MGP_WTSI_17_66459089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66416744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9425	CpG island 9425	1705 bp proximal
Gm65422	predicted gene, 65422	within coordinates
Rr370304	regulatory region 370304	1723 bp upstream
Rr405415	regulatory region 405415	1370 bp upstream
Rr529887	regulatory region 529887	843 bp proximal
Rr529888	regulatory region 529888	1725 bp proximal
Rr529889	regulatory region 529889	1907 bp proximal
Tssr145594	transcription start site region 145594	1780 bp upstream
Tssr145595	transcription start site region 145595	1856 bp upstream
Tssr149109	transcription start site region 149109	1767 bp downstream
Washc1	WASH complex subunit 1	1796 bp upstream