rs48543585 SNP Detail

Summary

• ID
  rs48543585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54357926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGTGTT TGAAACTAGG
  GTGAGGCAGG GAAAGAGAAG GAGGGTTTCC TTAGGGGCCG AGTGGGGAAG TTGGTTGATT
  TCTTAGATAA ACTGTTTGAA ACAGCAGTCT GTATTCTCCT TTTGCAAAGG TAGTGTCTGA
  GGTCAGGGCC AGCGCTTTTC TTCTGCAGTA TCCGAATGGC TGACTTCTTG GGACTTTGAG
  M
  GCAGTGTAGA GCCTTGGCTT CTGGGTAGAA GTCAGCTATT TCTGTTGTAA CCATATTCTG
  TAACAAATAG CGCTAAATTT TTAGTCTAAT GTCTTACTTT TACAGCAGGC CACCTGGATT
  TGGTTTCAAG ATGTGGATTG TGTTCAAATC TATTCCACAT GAAAGAAAAG GACCCAGGCA
  GAAACAACAG TGACTTCCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62394298	NES17237532	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48543585					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394298	NES17237532	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54357926 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1757 bp upstream
Tssr125528	transcription start site region 125528	76 bp downstream
Tssr125529	transcription start site region 125529	1001 bp upstream
Tssr125530	transcription start site region 125530	1406 bp upstream
Tssr125531	transcription start site region 125531	1438 bp upstream
Tssr125532	transcription start site region 125532	1456 bp upstream
Tssr125533	transcription start site region 125533	1568 bp upstream
Tssr125534	transcription start site region 125534	1644 bp upstream
Tssr125535	transcription start site region 125535	1673 bp upstream
Tssr125536	transcription start site region 125536	1692 bp upstream
Tssr125537	transcription start site region 125537	1721 bp upstream
Tssr125538	transcription start site region 125538	1761 bp upstream