rs48543775 SNP Detail

Summary

• ID
  rs48543775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:59952624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTAAA TGTAACATTT
  ATAGTGATCC CCTCCTTTCC TATAAAAGCA ATAGGTGTTC ATTGTAGAAA ATTTTGAAGA
  TGGAGGAAGG GAGGAAAAAA AGATGCTAAA TGCTCTCTGC ATCCCTGCCC TGCAGAGGAA
  ACATCTTGTT AACGCTCTGA TAGAAATAAT TTCTCTCTTA GTCTGTCTGT CTGTCTGTGA
  R
  TGCAAGCTGC TCTGGTAGTA AATAGGACAC ATATTTAAGA AGCCACTCGC CATCTACCCT
  GGGGAGGGTG AATGCAAAGC CAAGACAGGG CTCTACAGGG GTTTCAGCTC AACTGTCTTG
  AGGTGGGGAC TGGAGAGGGT GGTTGGGGAG GTGGGGAAGG AAGGAAGGTC ATGGAGAGGG
  CAGCGTGGCA TTCTAATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52322441	NES15286474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48543775					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52322441	NES15286474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59952624 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	1031 bp upstream
Rr432043	regulatory region 432043	1042 bp distal
Rr432044	regulatory region 432044	541 bp distal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	Intron
Tssr93522	transcription start site region 93522	1010 bp downstream