rs48544089 SNP Detail

Summary

• ID
  rs48544089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60869362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGAGTGA GTCGTGACTG
  CTCCAAACAG CCTGGGCAGC TGCGAACCCT CATGGCATCT AGGTGACCCT GTTCATCCTA
  CAGCTGTTCT CACTGAGGGG AGGGGAGCTT TTGAGTGAGC CAGTCAAAAC TCTGTGCTCG
  GTGATCCTGT GAGGCTCGGA ACGGTGGCAC CCGAAGCCAT GGGTGCACAC ACAAACAGGG
  Y
  TCTAATCGGT GGGATCACAA TCCATGAACA AGCATGAGAC CTCCCTTCTT CTCACACACA
  CACACACACA CACACACACA CACACACTCA CTCACATACA TGAGCTGGTT TCCACAACTG
  TGGGGTTAGC CTGGAAGGTG TCTGTCCTAT ATAGTACTCC AGTACCAGTG TTGCAGACTC
  TAGGCCCAGG AAAAGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52344311	NES15283565	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48544089					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52344311	NES15283565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60869362 () rs orientation: forward

Symbol	Name	Function Class
Gm20610	predicted gene 20610	within coordinates
Gm20611	predicted gene 20611	within coordinates
Rr219922	regulatory region 219922	639 bp proximal