rs48544276 SNP Detail

Summary

• ID
  rs48544276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128678843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAACAACA AGAGGAAATG
  GGAAAGAGGA GATGCACTTG TCATATAATT TCCAGGCCCT TTAGGAAACA TGAAGTTGGT
  CCTTTGGCCA CATATATGTC AATCTACTAA AAGGGTAATA CACTAAGGGA ATGGGTACTG
  TTCACAAAGG AACACGTCAG GAGAGTTACC ACGGCAAAAG TGAAAAGACA CAGAACTTAA
  R
  GGCAAGTTTC TCTCTAAGAG AATTAATGTA TTAATGTGCA TATAGACCAT ATTGAGCACG
  TGAAGACTGG AAACAGTTCC CAAAGCCCAT GAAGGACAAT GATCAAAGAA AAGGAAGTTA
  GAGAGAGAAC TTGAGTTCAG TTGAAAAGCT GGCCTGCTCC TCCTAGAGAA GCACATTTTG
  TAAGGCCTAA GGAGAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60795869	NES16470097	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48544276					SNP	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795869	NES16470097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128678843 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	within coordinates
Gm70593	predicted gene, 70593	within coordinates