rs48544287 SNP Detail

Summary

• ID
  rs48544287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3415560 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        GAAGGAATAA TTTGGAAGTA TAATGAATCA GTGAGGAGAG
  ATTGGAAAAA GGGTGGAGCC GTTGAAATGA GGATGATGGG TAGGAACTTG GAGATGGCAC
  R
  GCATCCTTCA GCCTAGAGTT CCTTAAGGAA TTGGGGCTTC ATGGGTGAGG CGCGGGAGAG
  GGGAGGGAGA AAGAGGAAAG GGAGGGACTC CAGCCTCAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63342990	NES17508898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48544287					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63342990	NES17508898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3415560 () rs orientation: reverse

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	within coordinates
Cpgi18210	CpG island 18210	within coordinates
Gm72265	predicted gene, 72265	within coordinates
Rr641804	regulatory region 641804	1167 bp proximal
Tssr64254	transcription start site region 64254	1073 bp downstream
Tssr64255	transcription start site region 64255	856 bp downstream
Tssr64256	transcription start site region 64256	831 bp downstream
Tssr64257	transcription start site region 64257	153 bp downstream
Tssr64258	transcription start site region 64258	47 bp downstream
Tssr64259	transcription start site region 64259	336 bp upstream
Tssr64260	transcription start site region 64260	366 bp upstream