rs48544661 SNP Detail

Summary

• ID
  rs48544661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12500226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC AACTTAAGCC CTAGGCACAT
  R
  CACTACACAC ATGTAGCAGA TGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145184138	ENSMUSSNP2454628	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325304126	CHEV_17_12474205	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48544661					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12500226 () rs orientation: forward

Symbol	Name	Function Class
Gm49962	predicted gene, 49962	805 bp downstream
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	1749 bp upstream