rs48545154 SNP Detail

Summary

• ID
  rs48545154
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144483199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTTGAT AGCAGTAAAA
  CCCAGCAGTG CTTACTGTAA ATGAAGACTG GAGAGGCATC CCAGCCTACC TATTTGCCCA
  TTGAACTCTT ACCTTTTAAA AGCTGAACTT TTCCCTATTG TATACAATAA CAATTCTGTA
  AATGATAATT TTGCAACTAA TGCTTGTGCA AATGTTCTCT AGACAAATAA ATAAAGATTT
  K
  TCCTTTAGCA TCATGATGGA AATTTTAAGG AATGTTAGTC AAGGGTTGAT GATCAGAATC
  TTACATAATC TCAGTTTGCT TTGTTTATGA GATTATATCA TTATTTAATT CATAGGATTT
  ATGGACCTAT CAAAGAACTG TCAAAATTGC AGTACTATTT CTTGTTCTTG GTAGCTGTGC
  TCATGTGTGA CATCTAGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60813230	NES16484935	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48545154					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60813230	NES16484935	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144483199 () rs orientation: forward

Symbol	Name	Function Class
Gm56327	predicted gene, 56327	1543 bp downstream
Tssr14112	transcription start site region 14112	1645 bp downstream