rs48545306 SNP Detail

Summary

• ID
  rs48545306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT GCTAATTACT ATGGTGCCAG
  R
  AACCATCTAA GCTACTCCTT TGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077446	ENSMUSSNP124572	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325166158	CHEV_16_45382049	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48545306					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202299 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	199 bp downstream
Tssr4884	transcription start site region 4884	754 bp downstream
Tssr4885	transcription start site region 4885	791 bp downstream
Tssr4886	transcription start site region 4886	1123 bp downstream
Tssr141220	transcription start site region 141220	663 bp downstream
Tssr141221	transcription start site region 141221	686 bp downstream
Tssr141222	transcription start site region 141222	807 bp downstream
Tssr141223	transcription start site region 141223	820 bp downstream
Tssr141224	transcription start site region 141224	839 bp downstream
Tssr141225	transcription start site region 141225	863 bp downstream
Tssr141226	transcription start site region 141226	915 bp downstream
Tssr141227	transcription start site region 141227	969 bp downstream
Tssr141228	transcription start site region 141228	1011 bp downstream
Tssr141229	transcription start site region 141229	1027 bp downstream
Tssr141230	transcription start site region 141230	1180 bp downstream
Tssr141231	transcription start site region 141231	1274 bp downstream
Tssr141232	transcription start site region 141232	1326 bp downstream