rs48545741 SNP Detail

Summary

• ID
  rs48545741
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGAGACA CTCTGTGTAG CCGTGAAACT TACTCTGTAG
  ACCAGTCTGG CCTCGAACCT AGAGATCTGC CTGACTCAGC TTCCCCATTG CTGGCCTTAA
  W
  TGTGTATGCC ACCACGCCAG GCCGATTTTC TAGAAACTTG GATTCCAAGG CTTTTTTTTT
  TCTACAGGAT TCCAGGAAGA GTGGGTTTTG TGGTCATCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147525928	ENSMUSSNP359213	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321346952	CHEV_4_133898755	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48545741					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	82 bp proximal
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1967 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	341 bp upstream
Tssr39548	transcription start site region 39548	303 bp upstream
Tssr39549	transcription start site region 39549	358 bp upstream
Tssr39550	transcription start site region 39550	653 bp upstream
Tssr39551	transcription start site region 39551	683 bp upstream
Tssr39552	transcription start site region 39552	758 bp upstream
Tssr39553	transcription start site region 39553	792 bp upstream
Tssr39554	transcription start site region 39554	843 bp upstream
Tssr39555	transcription start site region 39555	1042 bp upstream
Tssr39556	transcription start site region 39556	1162 bp upstream