rs48546577 SNP Detail

Summary

• ID
  rs48546577
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAATTTA ATACTAAGTA
  AATTAGGATG CAATAGGGTG TTGTCTTTCA AAAAGTGTTA CTCTGAAGAC TCATTCTGAG
  ATATTCTGAG ATAATCTTTA AAAAAAAAAG GTTCAGAACT GGAAAGTTTG AGAATGCTAC
  ATTAAAGAAG CTTGGGAAGC CCGGCGTGAG GGCTCCTCTT CTTAAGTCCT TACCATTGTA
  K
  CCGATTAAAG GCTCCTGGGT ACCAAAGAAA TCTGACTGAC TCTGTTCAAT AAAGCATTTT
  CCAAGCTAAT TTGATGCAAA GGTATCTCTT CTATTCATGT ACTAACACTC CTCAGTGTTC
  ATTAGCAGCA AGCAGCCTTT GGAAAGCCTC TGGTTTAACC TAGAAGATGA ACCGTCAGCA
  CCTCTGGGAA TCCCTCCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133185746	ENSMUSSNP3323094	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48546577					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912262 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	within coordinates
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1851 bp upstream
Rr630096	regulatory region 630096	1430 bp distal
Rr630097	regulatory region 630097	905 bp distal
Rr630098	regulatory region 630098	644 bp distal
Rr630099	regulatory region 630099	1806 bp proximal
Rr630100	regulatory region 630100	1978 bp proximal