rs48546762 SNP Detail

Summary

• ID
  rs48546762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114293671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGTGGC CTGATACAGC
  ACACCACAGC CTCCTGCTGA AAGGTGACAC TCAGAAGGCC GGGCTCCCTT AGTCACCCTG
  TGGGCACTTG TGAGACTCTC CTGAGAATGG AACTGGTGGC CACGTCCCCA GTGTTGGTAA
  GTGGCCCTAA ACATTCAGGA GCTGAACCGG GTGGGAGAAA AAAAAAGTCT CAAGTAGAGA
  Y
  GGGGACTGTA GGATGCTGTC CCTGTCCCTC CAAGACCTTG ACTAGACAGA GTGAATGTGT
  TATTTTGGGA AGGGGACAAG CCCTCCACCT GCTGCACCAT GGTGTTGGCC ACTGGCCAGT
  GCTTGCTGGA GCCTGGCAGC TTCCTGCATT GGGCATGGTA GGCTAGATGG CTCCGGCACC
  AGACAGTTGT TGCTTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60825946	NES16029826	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48546762					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825946	NES16029826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114293671 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	471 bp distal
Rr108155	regulatory region 108155	1730 bp proximal
Rr120008	regulatory region 120008	1263 bp proximal
Rr120009	regulatory region 120009	1635 bp proximal
Tssr48071	transcription start site region 48071	177 bp downstream
Tssr48072	transcription start site region 48072	143 bp downstream
Tssr48073	transcription start site region 48073	95 bp downstream