rs48548229 SNP Detail

Summary

• ID
  rs48548229
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57882554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGGTT TCACAGACTC
  TAGGAACACT TCAGATATCT ATTATTACTT GGACAAACTC TGGCTGTGTG TTGGACAGTG
  GATGAAATTA TTTCTCAAAC TCACACATTG GAAAACTGAG GGGGGTGGAA CCTAGCTTTT
  CATAGTTCAG GCCTTTGCAT TGCAAGCAAA AGTCTTTGCC ATCCAATACC TGATGTTTAC
  W
  TGTGCGTCAT GAAACTCATC CACAGCACTT CTGAGACTGT CTCTCTTGCA TTTAGTTCTT
  TAGTTGCTTG GCAAACTTGG TGGCTTGTAA TCTTGTGATG TAAAGGGACA ACCGTGCATC
  TGATTTATTT AAGAAAGAAA AAAGAAAGAA ATGGATTTCA TTTATCTTTT TAAATTTGTG
  CTGAATAATT TCAATAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61167716	NES16674392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48548229					SNP	T	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61167716	NES16674392	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57882554 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	1753 bp distal
Rr125228	regulatory region 125228	553 bp distal
Rr125229	regulatory region 125229	within coordinates
Rr125230	regulatory region 125230	646 bp proximal