rs48549018 SNP Detail

Summary

• ID
  rs48549018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63218272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAACAA AAAAACAAAA
  CCACCCAAAT ATAAACAAAC GAAAATCGCA AACTCCCATC GGAACGTTCA TTGGTGTCCA
  GATCCCGGGA AGGGAAACGG TTGCAGGTCA TTTCTGGTGC TCAGGGATTG CCTTCCGGAC
  GCCGCTGAGA CTTGGAAGAA TCTTAAAGGG AAGACGGGAG CTGACACCAT TTGCACGGAA
  Y
  TTTGGGGCGC GCTCGGAGGA GACAGGTGGG AGAGGGGTGG ATGTCAGTGG GTTGTGGGCT
  GGCCAATGTC TTGTCTGCTC TCAGAGCTTC TGAGGTTTGT AGTCACTTAT TTCTAGGATC
  AAAGATGAAT TTCACGTAAA CACCCCTTTT AGCTGACACG CCTAAAAATG CTGAGGCAGG
  GGGATGGTCT GAAGCTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52347170	NES15278317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48549018					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347170	NES15278317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63218272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	638 bp distal
Cpgi1650	CpG island 1650	within coordinates
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	within coordinates
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	329 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	251 bp downstream