rs48549559 SNP Detail

Summary

• ID
  rs48549559
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147167107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TTTCCCCCTT TTCCTTTCTC
  W
  ACCCCATCAC CCACCATCTT TTCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134013080	ENSMUSSNP5811375	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322086698	CHEV_6_147214131	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48549559					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147167107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	1057 bp distal
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	738 bp distal
Pthlh	parathyroid hormone-like peptide	1596 bp upstream
Rr145960	regulatory region 145960	1106 bp distal
Tssr59618	transcription start site region 59618	1506 bp downstream
Tssr64140	transcription start site region 64140	1735 bp upstream
Tssr64141	transcription start site region 64141	1669 bp upstream
Tssr64142	transcription start site region 64142	1632 bp upstream
Tssr64143	transcription start site region 64143	1581 bp upstream
Tssr64144	transcription start site region 64144	1457 bp upstream