rs48550023 SNP Detail

Summary

• ID
  rs48550023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121805001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGAAAT ATGCAGCTAC
  TCTTCCCAGC CCATAATAAA CTACACTGAA GAACTTCAAC AGCCAAGGCT CATAAAGCTT
  ATGTGTTTTG CCCTGCAGAG TGGTGGATCA TGCAGAAGAG AACAAGATGA ATTCTAAGAA
  CTTGGGGGTG ATATTTGGAC CAACTCTCAT TAGGCCAAGG CCTACAACGG CTCCTGTCAC
  Y
  ATCTCGTCCC TTGCTGAATA TTCCAATCAG GCACGATTAG TAGAGTTCCT TATTACTTAC
  TCACAGAAGA TCTTCGATGG GTCCCTCCAG CCTCAAGCTG TTGTTATATC TAACACAGGT
  GCTGTGGCAC CTCAGGTTGA TCAAGGCTAT CTTCCAAAAC CTCTGTTATC ACCAGATGAG
  AGAGACACAG ATCATTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60441915	NES15937413	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48550023					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441915	NES15937413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121805001 () rs orientation: forward

Symbol	Name	Function Class
Arhgap29	Rho GTPase activating protein 29	Coding-Synonymous
Rr584215	regulatory region 584215	1155 bp proximal