rs48550130 SNP Detail

Summary

• ID
  rs48550130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126680633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGTTTAT TCTATTCTAT
  GTCTGCCACC ACACGGCTGG TCACCTCGCC TCAGTTTCAT GCATCCAACT TCCTCAAAGT
  TCAGGACGAA TGCTCTTCTC TTGACTCTTT CCCAGAATTC CTTCTCTCTC TGCCAGAAGT
  CCCACCTTCT ATTTCCTGCC TGAGCTAATA GGCCATCAGC AGGAGATGCT GCCACATAAT
  R
  CATAAGCCAT TCTCTCTACA CCACATTTGG TATGGTTTCT TTTAACTTCT ATTATTTTTA
  ATTATGTGTC TGTGAGGAGG CTTTGGCCAG TCCGGAAGCT CGCGGTACAC GAAGTTTTGC
  GCCCCCTAGA GGAGGGTGCT GAGAACTCCG CTCCGTGCTC GCATTTGTTC TTTTCTAACC
  CGCATTTGTT CTTTTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147726485	ENSMUSSNP3680126	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48550130					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126680633 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	1155 bp upstream
Rr440688	regulatory region 440688	within coordinates
Rr440689	regulatory region 440689	116 bp proximal
Rr440690	regulatory region 440690	665 bp proximal