rs48550362 SNP Detail

Summary

• ID
  rs48550362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCTAGTAC TGGGGGGGCG AAGGTGGGGG
  GTGCAGAGGA GTCCATATCC CTTCCCAGGA GAGGCAGGCT AAGCTTGTCA ACATTGGAAA
  GGTTTCCCTG GGACCCACTA TGTTCCTGCC AGTGTGGCCC TTGCTTCACC CCAACCTGCC
  Y
  TTAGGGATGG CTCTTGTTCA GAGCCTTCAC ATTGTAGGTG GCTTTTCTGA CTTCTGGGAT
  AGTGAGGGAT TGTTCAGGAC GTAATTGCTT CGAGTGTAAG ACATTTCCAG CGCATTCTAC
  AGGGTGTCCG GCTGGGAAGT CACCTGACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145547998	ENSMUSSNP4384354	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319993833	CHEV_1_137733810	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48550362					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764971 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	810 bp distal
Rr419295	regulatory region 419295	501 bp distal
Rr419296	regulatory region 419296	within coordinates
Rr419297	regulatory region 419297	516 bp proximal
Tnnt2	troponin T2, cardiac	Intron
Tssr9005	transcription start site region 9005	837 bp downstream
Tssr9006	transcription start site region 9006	1177 bp upstream
Tssr9007	transcription start site region 9007	1674 bp upstream