rs48551644 SNP Detail

Summary

• ID
  rs48551644
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19190528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT GTCCTAGTCA CAGTTATCTT
  C
  GCCTCTCCAC GAGTTTCATC TTAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148777423	ENSMUSSNP598543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322523293	CHEV_8_19140512	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48551644					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19190528 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	266 bp upstream
Spag11b	sperm associated antigen 11B	247 bp upstream
Tssr76531	transcription start site region 76531	239 bp upstream
Tssr76532	transcription start site region 76532	859 bp upstream
Tssr76533	transcription start site region 76533	917 bp upstream
Tssr76534	transcription start site region 76534	935 bp upstream
Tssr76535	transcription start site region 76535	970 bp upstream
Tssr80550	transcription start site region 80550	959 bp downstream