rs48552337 SNP Detail

Summary

• ID
  rs48552337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171121574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC ACATCCTGGG TACAGAGAAC
  R
  TATGAGCCTC ATCAATTTAT GAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss119997243	PARCsnp_1.12698	PARC_SEQ	INBRED	f	SNP			A	G
ss119999062	PARCsnp_1.01799	PARC_SEQ	INBRED	f	SNP			A	G
ss146159412	ENSMUSSNP4016705	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				A
ss320117856	CHEV_1_173224132	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48552337					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171121574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	484 bp proximal
Rr28967	regulatory region 28967	within coordinates
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	751 bp downstream
Tssr15032	transcription start site region 15032	823 bp downstream
Tssr15033	transcription start site region 15033	936 bp downstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	within coordinates